species:   Pimic
pid:       PID1824
parent:    Pmic_miR-1
paralog:   
locus:     scaffold_12:478925-479041
matures:   ['GUUGAGCCUGAUACAGUAGCCU', 'GCUACCGUUGUCAGACUUAACGU']
srr:       SRX5082409
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082409.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRX5082409.cram scaffold_12:478925-479041

1 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

***********************                                                                       ***********************
UGCUACCGUUGUCAGACUUAACGUGAAACGUGCAGGAAUGCAGGUGCGCUAGUAAUAUCAGGCUUCACUCUUGUAUCAUUCUCAGGCCGCCUCAGGUUGAGCCUGAUACAGUAGCCU
.(((((.((.(((((.((((((.(((..((.((..(((((((((.(.(..(((........))).).).))))))).....))..))))..))).)))))).))))))).)))))..
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=0 c
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=0 c*
-GCUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=22 a=2 ma
------------------------------------------------------------------------------------------------UUGAGCCUGAUACAGUAGCCU l=21 a=0 ma*

-GCUACCGUUGUCAGACU--------------------------------------------------------------------------------------------------- l=17 a=1 
-GCUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=22 a=2 (ma)
UGCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1011111
ku-01
ss-101111111110
fn-011
